PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g11140
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARF
Protein Properties Length: 705aa    MW: 77854 Da    PI: 7.5498
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g11140genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.7e-24114215199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++ + l+
  Tp4g11140 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RSEPGDLC 209
                89****************************987555555..8************************************************..4589999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r+
  Tp4g11140 210 VGIRRA 215
                ***996 PP

2Auxin_resp114.69e-38283366183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ +a+ +++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
   Tp4g11140 283 AVARAACGQAFEVVYYPRASTPEFCVKASDVRAAMRIRWCSGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 366
                 56778899**************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-37107218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-29110216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-21113214No hitNo description
PROSITE profilePS5086313.014114216IPR003340B3 DNA binding domain
PfamPF023621.2E-21114215IPR003340B3 DNA binding domain
SMARTSM010191.2E-21114216IPR003340B3 DNA binding domain
PfamPF065072.4E-32284366IPR010525Auxin response factor
PROSITE profilePS5174517.515592680IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MEQEKSLDPQ LWHACAGSMV QIPSVNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV  60
AVKFLADAET DEVYSKITLL PLPGNDLDLE NDAVLGLTPS PDGNGNGNEK PASFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PRLDYTAEPP VQTVIAKDIH GETWKFRHIY RGTPRRHLLT  180
TGWSTFVNQK KLIAGDSIVF LRSEPGDLCV GIRRAKRGDL GSNGLGSDNN NNSSYPGFSG  240
FLRDDETTAA KLMMMKRNGS GGGNGIDVNA PGGRVRVEAM TEAVARAACG QAFEVVYYPR  300
ASTPEFCVKA SDVRAAMRIR WCSGMRFKMA FETEDSSRIS WFMGTVSAVQ VADPIRWPNS  360
PWRLLQVAWD EPDLLQNVKR VSPWLVELVS NMPAIHLSPF SPRKKLRIPQ PFDFPFDGTK  420
FPIFSPGFAN NNGESMCYLS NDNNNAPAGI QGARQAQQLF GSPSPSLLSD LNLNSYSGNK  480
LQQSSPAMFL SGFNSSHHYD NIVMSRQARD TEFNNNISCS LTMGNPGLVQ DKKKSGPVKT  540
HQFLLFGQPI LTEQQVINRK RSLEEEAKAA KEEKGSADRG LTWHYGLQGL ETGHCKVFME  600
SEDVGRTLDL SVIGSYQELN RKLAEMFCIE ERSDLLTHVV YRDANGVIKR IGDEPFSDFM  660
RATKRLTIKM DIGGDNVRKT WITGIRNGEN GIDSSNKTGP LSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-79738751388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530580.0AK353058.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409860.10.0hypothetical protein EUTSA_v10016329mg
SwissprotQ9SKN50.0ARFJ_ARATH; Auxin response factor 10
TrEMBLE4MX110.0E4MX11_EUTHA; Auxin response factor
TrEMBLV4MFJ20.0V4MFJ2_EUTSA; Auxin response factor
STRINGBra011955.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10